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Malta: Private Boat Charter Gozo, Comino & Blue Lagoon

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3h rating 4.90 (364 reviews)
summary

Summary

Private Malta boat tour to Gozo Comino and secret lagoons with swim stops

You’ll glide across Malta’s clearest waters by private boat with a local captain who knows every cove. Swim in Blue Lagoon, snorkel hidden caves near Gozo, and feel that salty air as you relax under a shady canopy. This trip is all about small surprises: flour-soft sand at Santa Marija Bay or steering past movie-famous cliffs—leaving you wishing for just one more hour at sea.

experience

What’s the experience like?

The first thing I remember is the color — that wild, impossible blue around Comino. We set off from Mellieha with our captain, Mark (who greeted us like we were old friends), and within minutes the sound of the engine faded into wind and gulls. I was still fiddling with my snorkel mask when Mark pointed out Saint Mary’s Tower up on the cliff — he said it’s been there since the 1600s, watching for pirates. I tried to picture it back then but honestly just got distracted by how clear the water looked below us.

We drifted into the Blue Lagoon and Mark killed the engine so suddenly it got quiet — except for someone laughing on another boat nearby. The water here really does look fake; you can see straight down to white sand and tiny fish darting around your toes. My partner dove in first (show-off) while I hesitated because, well, cold! But after a second you get used to it and then you don’t want to get out. Mark tossed us some snorkel gear and told us about movies filmed here — apparently Brad Pitt swam these same waters? Not sure if that’s true but I liked imagining it.

After that we stopped at Santa Marija Bay where the sand felt almost floury underfoot, and there were tamarisk trees rustling behind us. There’s this little medieval chapel up the path that looks like something from an old western — we didn’t go inside but I kind of wish we had now. Back on board, Mark steered us toward Crystal Lagoon, weaving through caves where sunlight bounced off stone walls in weird patterns. He let my friend try steering for a minute (don’t worry, he kept one hand close), which made her day.

I still think about that feeling — sun-warmed skin, salt drying on my arms, that lazy rocking of the boat while we snacked on fruit we’d brought along. The whole Malta private boat trip felt like slipping into a slower rhythm for a few hours; no rush except maybe racing each other back from Cominotto beach (I lost). On the way back to Cirkewwa Port I watched fishermen fixing their nets near Mgarr Harbor and wondered what their stories are.

3h
itinerary

Step-by-step itinerary

Day 1 — Private boat tour around Malta islands

  • Pickup at Cirkewwa Port or Marina
  • Cruise south coast of Gozo island
  • Visit Mgarr Harbor Gozo
  • Explore Qala coast and caves
  • Stop at Hondoq ir-Rumien Bay
  • See Saint Mary's Tower from boat
  • Visit Blue Lagoon for swim and snorkel
  • Stop at Cominotto Beach and reef
  • Explore Santa Marija Bay and caves
  • Snorkel at Crystal Lagoon and caves
  • Drop off at chosen port
questions

Top questions

How long is the Malta private boat trip?

How long is the Malta private boat trip?

The tour lasts about 3 hours from departure to return.

Where does the private charter depart from?

Where does the private charter depart from?

The main pickup points are Cirkewwa port in Malta or Mgarr port in Gozo.

Is snorkeling equipment included?

Is snorkeling equipment included?

Yes, masks and snorkels are provided free of charge during the trip.

Can we customize our route or stops?

Can we customize our route or stops?

Yes, your Malta private boat trip can be customized based on your group’s preferences.

How many people can join per boat?

How many people can join per boat?

The base price covers up to 6 people; extra guests cost €10 each.

Are there shaded areas on board?

Are there shaded areas on board?

Yes, there’s a canopy for shade so you can escape the midday sun if needed.

What are some highlights of this day trip?

What are some highlights of this day trip?

You’ll visit Blue Lagoon, Crystal Lagoon, Santa Marija Bay, Cominotto beach and see Saint Mary’s Tower from the water.

Can infants join this private charter?

Can infants join this private charter?

Yes, infants are welcome; specialized infant seats are available if needed.

inclusions

What’s included

Your day includes pickup at Cirkewwa or Mgarr port (your choice), all marina fees plus anchoring costs at Blue Lagoon and Crystal Lagoon National Reserve. A professional captain guides your private group through Gozo and Comino bays with snorkel gear provided onboard—and plenty of shade under a canopy while you relax between swims or cave stops.

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